SMTL ID : 3qqd.1

Human SOD1 H80R variant, P212121 crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.47, H.49, H.64, H.121 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.47, A:H.49, A:H.64, A:H.121 ZN.3: 4 residues within 4Å: Chain B: H.47, H.49, H.121 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.47, B:H.49, B:H.121

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.49, H.64, H.121, G.142, R.144 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:H.49, A:H.64, A:H.121, A:R.144 SO4.4: 7 residues within 4Å: Chain B: H.47, H.49, H.64, H.121, A.141, R.144 Ligands: ZN.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.64, B:A.141, B:R.144 Water bridges: B:H.64, B:R.81 Salt bridges: B:H.47, B:H.49, B:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seetharaman, S.V. et al., Disrupted zinc-binding sites in structures of pathogenic SOD1 variants D124V and H80R. Biochemistry (2010)

Release Date

2011-03-09

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Cu-Zn]