SMTL ID : 3qrd.3 (2 other biounits)

Crystal structure of L68V mutant of human cystatin C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-octamer

Ligands

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: N.82, C.83, P.84 Chain B: R.45 No protein-ligand interaction detected (PLIP) PEG.2: 3 residues within 4Å: Chain A: N.61, Q.100, K.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.100 Water bridges: A:S.113 PEG.3: 4 residues within 4Å: Chain C: N.82, C.83, P.84 Chain D: R.45 No protein-ligand interaction detected (PLIP) PEG.4: 3 residues within 4Å: Chain C: N.61, Q.100, K.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.100 Water bridges: C:S.113 PEG.5: 6 residues within 4Å: Chain F: C.73, P.78, N.79, N.82, C.83, P.84 No protein-ligand interaction detected (PLIP) PEG.6: 6 residues within 4Å: Chain E: V.57, N.61, Q.100, Y.102 Chain F: N.61, Y.102 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:N.61, E:Q.100, F:N.61 Water bridges: E:S.113 PEG.7: 1 residues within 4Å: Chain F: Q.118 No protein-ligand interaction detected (PLIP) PEG.8: 3 residues within 4Å: Chain F: P.78, N.79, L.80 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:L.80 PEG.9: 6 residues within 4Å: Chain H: C.73, P.78, N.79, N.82, C.83, P.84 No protein-ligand interaction detected (PLIP) PEG.10: 6 residues within 4Å: Chain G: V.57, N.61, Q.100, Y.102 Chain H: N.61, Y.102 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain G Hydrogen bonds: H:N.61, G:N.61, G:Q.100 Water bridges: G:S.113 PEG.11: 1 residues within 4Å: Chain H: Q.118 No protein-ligand interaction detected (PLIP) PEG.12: 3 residues within 4Å: Chain H: P.78, N.79, L.80 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:L.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orlikowska, M. et al., Crystal structure of L68V mutant of human cystatin C. To be Published

Release Date

2012-02-29

Peptides

Cystatin-C: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
C

F
D

G
C

H
D

Cystatin-C

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