SMTL ID : 3qrp.1

Structure of Thermus Thermophilus Cse3 bound to an RNA representing a product mimic complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x G- U- C- C- C- C- A- C- PGP: RNA (5'-R(*GP*UP*CP*CP*CP*CP*AP*CP*(PGP))-3')(Non-covalent)

G-U-C-C-C-C-A-C-PGP.1: 19 residues within 4Å: Chain A: N.158, R.162, K.168, R.169, V.170, A.171, F.209, K.223, L.224, L.225, Q.226, V.227, Q.228 Ligands: U5P-G-U-G-G-G-G.2, U5P-G-U-G-G-G-G.2, U5P-G-U-G-G-G-G.2, U5P-G-U-G-G-G-G.2, U5P-G-U-G-G-G-G.2, U5P-G-U-G-G-G-G.2 No protein-ligand interaction detected (PLIP)

1 x U5P- G- U- G- G- G- G: RNA (5'-R(P*(U5P)P*GP*UP*GP*GP*GP*G)-3')(Non-covalent)

U5P-G-U-G-G-G-G.2: 22 residues within 4Å: Chain A: Y.79, R.99, K.161, R.162, L.163, A.164, R.169, R.184, R.185, R.214, K.223, L.225, G.253, P.254, K.256, A.257 Ligands: G-U-C-C-C-C-A-C-PGP.1, G-U-C-C-C-C-A-C-PGP.1, G-U-C-C-C-C-A-C-PGP.1, G-U-C-C-C-C-A-C-PGP.1, G-U-C-C-C-C-A-C-PGP.1, G-U-C-C-C-C-A-C-PGP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.161

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: F.55, R.97, R.249, R.250 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.97, A:R.97, A:R.250, A:R.250 Salt bridges: A:R.97, A:R.249, A:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gesner, E.M. et al., Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-05-25

Peptides

Putative uncharacterized protein TTHB192: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein TTHB192

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