SMTL ID : 3qry.1 (1 other biounit)

Analysis of a new family of widely distributed metal-independent alpha mannosidases provides unique insight into the processing of N-linked glycans, Streptococcus pneumoniae SP_2144 1-deoxymannojirimycin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x DMJ: 1-DEOXYMANNOJIRIMYCIN(Non-covalent)

DMJ.1: 13 residues within 4Å: Chain A: T.53, W.60, R.62, D.63, P.216, S.217, D.218, N.302, H.350, W.357, R.405, F.408, W.410 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.62, A:R.62, A:R.62, A:D.218, A:N.302, A:R.405 Water bridges: A:D.218, A:H.350, A:H.350, A:E.393

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: A.250, D.251, S.252, Q.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.251, A:S.252, A:Q.253 EDO.3: 4 residues within 4Å: Chain A: R.69, H.73, E.149, E.417 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.69, A:E.149, A:E.417 Water bridges: A:E.149 EDO.4: 4 residues within 4Å: Chain A: W.11, E.14, R.18, I.425 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.14, A:E.14 Water bridges: A:R.77, A:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gregg, K.J. et al., Analysis of a New Family of Widely Distributed Metal-independent {alpha}-Mannosidases Provides Unique Insight into the Processing of N-Linked Glycans. J.Biol.Chem. (2011)

Release Date

2011-03-09

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative uncharacterized protein

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