SMTL ID : 3qsb.1

Structure of E. coli polIIIbeta with (Z)-5-(1-((4'-Fluorobiphenyl-4-yl)methoxyimino)butyl)-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 743: (1R,5R)-5-{(1Z)-N-[(4'-fluorobiphenyl-4-yl)methoxy]butanimidoyl}-2,2-dimethyl-4,6-dioxocyclohexanecarbonitrile(Non-covalent)

743.1: 13 residues within 4Å: Chain A: R.152, T.172, G.174, H.175, R.176, R.240, P.242, R.246, V.247, S.346, V.360, V.361, M.362 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.246, A:V.247, A:V.247 Hydrogen bonds: A:R.240 743.2: 14 residues within 4Å: Chain B: R.152, Y.154, T.172, G.174, H.175, R.176, R.240, P.242, R.246, V.247, S.346, V.360, V.361, M.362 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.172, B:P.242, B:R.246, B:V.247, B:M.362 Hydrogen bonds: B:Y.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wijffels, G. et al., Binding inhibitors of the bacterial sliding clamp by design. J.Med.Chem. (2011)

Release Date

2011-06-08

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III subunit beta

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