SMTL ID : 3qve.2 (2 other biounits)

Crystal structure of human HMG box-containing protein 1, HBP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.64, H.126, I.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.127 Salt bridges: A:H.64, A:H.126

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.17, W.28, K.76, E.92 Ligands: EDO.10 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: D.57, G.58, K.60, D.80, P.81, G.82, V.130 Ligand excluded by PLIP EDO.4: 1 residues within 4Å: Chain A: K.22 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: S.67, V.68 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: W.9, H.10, G.53, Y.54, S.56, P.133 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: H.21, T.78, T.90 Ligands: EDO.9, EDO.14 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: Y.100, V.101, K.102, N.103, K.104, G.105, D.138 Ligand excluded by PLIP EDO.9: 8 residues within 4Å: Chain A: S.63, H.64, E.65, K.76, L.77, T.78, T.90 Ligands: EDO.7 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: W.28, K.76 Ligands: EDO.2, EDO.14 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: K.22, G.23, K.26 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: H.64, E.65 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: S.69, F.70 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: C.19, H.21, T.90 Ligands: EDO.7, EDO.10 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: V.116, Q.117, H.118, G.119 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain A: G.53, Y.54, G.55, S.56, D.57, P.81, T.83, D.86 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain A: S.3, W.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of human HMG box-containing protein 1, HBP1. To be Published

Release Date

2011-03-16

Peptides

HMG box-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

HMG box-containing protein 1

Related Entries With Identical Sequence