- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x K95: (4R)-N-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]-3-[(2S,3S)-2-HYDROXY-3-{[S-METHYL-N-(PHENYLACETYL)-L-CYSTEINYL]AMINO}-4-PHENYLBUTANOYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXAMIDE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: K.191, D.192, K.224
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.224
EDO.3: 5 residues within 4Å:- Chain A: S.341, E.398, N.411
- Chain B: M.409
- Ligands: PG5.10
No protein-ligand interaction detected (PLIP)EDO.4: 2 residues within 4Å:- Chain A: D.253, I.256
No protein-ligand interaction detected (PLIP)EDO.9: 7 residues within 4Å:- Chain A: F.237, S.241
- Chain B: P.399, E.401, N.402, I.403, S.405
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Water bridges: A:F.234, A:S.241, B:F.404, B:F.404
- Hydrogen bonds: B:S.405
EDO.13: 8 residues within 4Å:- Chain C: S.161, Y.223, G.248, L.249, G.250, P.261, Y.262, Y.438
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Y.223, C:G.250, C:G.250, C:Y.262, C:I.263
- Water bridges: C:Y.223
EDO.14: 3 residues within 4Å:- Chain C: Q.269, N.270, K.271
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.271
EDO.15: 4 residues within 4Å:- Chain C: L.213, S.220, P.222, K.271
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.271
EDO.16: 5 residues within 4Å:- Chain C: D.192, T.194, F.209, K.224, G.257
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.224, C:G.257
- Water bridges: C:D.192, C:D.192
EDO.18: 7 residues within 4Å:- Chain C: F.237
- Chain D: P.399, E.401, N.402, I.403, F.404, S.405
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Water bridges: C:S.241, D:F.404
- Hydrogen bonds: D:S.405
EDO.19: 4 residues within 4Å:- Chain D: E.348, N.351, Q.352, E.355
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.348, D:E.355, D:E.355
- Water bridges: D:Q.352
EDO.20: 6 residues within 4Å:- Chain D: S.160, S.161, N.162, W.164, L.254
- Ligands: K95.12
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.161, D:N.162, D:N.162
- Water bridges: D:A.159, D:S.160
EDO.21: 1 residues within 4Å:- Chain D: N.148
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.148
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 3 residues within 4Å:- Chain A: P.195, V.196, K.197
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.197
PG4.6: 3 residues within 4Å:- Chain A: S.220, P.222, K.271
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.269, A:K.271
PG4.7: 2 residues within 4Å:- Chain A: Y.307, K.309
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.307
PG4.22: 9 residues within 4Å:- Chain B: R.383
- Chain D: D.319, L.320, D.321, K.331, R.383, S.384, P.385
- Ligands: NA.17
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:R.383
- Water bridges: D:D.321
- 1 x ACT: ACETATE ION(Non-functional Binders)
- 1 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bhaumik, P. et al., Structural insights into the activation and inhibition of histo-aspartic protease from Plasmodium falciparum. Biochemistry (2011)
- Release Date
- 2011-10-12
- Peptides
- Histo-aspartic protease: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x K95: (4R)-N-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]-3-[(2S,3S)-2-HYDROXY-3-{[S-METHYL-N-(PHENYLACETYL)-L-CYSTEINYL]AMINO}-4-PHENYLBUTANOYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXAMIDE(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x ACT: ACETATE ION(Non-functional Binders)
- 1 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bhaumik, P. et al., Structural insights into the activation and inhibition of histo-aspartic protease from Plasmodium falciparum. Biochemistry (2011)
- Release Date
- 2011-10-12
- Peptides
- Histo-aspartic protease: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D