SMTL ID : 3qw3.1

Structure of Leishmania donovani OMP decarboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.40, R.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.40 Water bridges: A:R.238 Salt bridges: A:R.238 SO4.2: 4 residues within 4Å: Chain A: K.49, D.82, P.199, N.226 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.82 Water bridges: A:K.49, A:K.84, A:K.84, A:K.84, A:N.226, B:T.91 Salt bridges: A:K.49 SO4.3: 4 residues within 4Å: Chain A: V.227, S.228, R.229, G.230 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.228, A:R.229, A:G.230 Water bridges: A:G.200, A:G.200 SO4.4: 3 residues within 4Å: Chain A: R.152, R.161 Chain B: L.147 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.152, A:R.161 SO4.5: 5 residues within 4Å: Chain B: F.4, N.8, T.193, W.195, R.217 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.8, B:W.195 Salt bridges: B:R.217 SO4.6: 5 residues within 4Å: Chain B: R.10, R.13, H.42, E.43, I.77 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.42 Salt bridges: B:R.10, B:R.13, B:H.42 SO4.7: 5 residues within 4Å: Chain A: I.88 Chain B: K.49, D.82, P.199, N.226 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.226 Water bridges: B:K.49, B:K.84, B:K.84, B:G.200, B:N.226 Salt bridges: B:K.49 SO4.8: 2 residues within 4Å: Chain A: L.147 Chain B: R.152 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.161, B:R.161 Salt bridges: B:R.152 SO4.9: 6 residues within 4Å: Chain B: G.202, A.203, V.227, S.228, R.229, G.230 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.202, B:G.202, B:S.228, B:R.229, B:G.230 Water bridges: B:G.200, B:G.200, B:G.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

French, J.B. et al., The Leishmania donovani UMP synthase is essential for promastigote viability and has an unusual tetrameric structure that exhibits substrate-controlled oligomerization. J.Biol.Chem. (2011)

Release Date

2011-04-20

Peptides

Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (Ompdcase-oprtase, putative): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (Ompdcase-oprtase, putative)