SMTL ID : 3qw9.1

Crystal structure of betaglycan ZP-C domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- FUC- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC-FUC.1: 10 residues within 4Å: Chain A: P.1, N.2, S.3, N.4 Chain B: P.57, Y.58, R.63, T.112, S.113, L.114 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.114, B:P.57 Water bridges: B:S.113

1 x NAG- NAG- BMA- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC-FUC.2: 10 residues within 4Å: Chain A: P.57, Y.58, R.63, F.110, N.111, T.112 Chain B: P.1, N.2, S.3, N.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.2, A:Y.58, A:N.111, A:N.111 Water bridges: A:S.113, A:S.113, A:L.114 Hydrophobic interactions: A:P.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, S.J. et al., Structure of betaglycan zona pellucida (ZP)-C domain provides insights into ZP-mediated protein polymerization and TGF-{beta} binding. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-04-06

Peptides

Transforming growth factor beta receptor type 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming growth factor beta receptor type 3