- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.2: 14 residues within 4Å:- Chain A: T.31, N.32, A.33, G.34, K.35, T.36, T.37, K.57, D.72, E.138, N.197, K.199, Q.228
- Ligands: MG.3
21 PLIP interactions:21 interactions with chain A- Hydrogen bonds: A:N.32, A:N.32, A:G.34, A:K.35, A:K.35, A:T.36, A:T.36, A:T.37, A:T.37, A:K.57, A:N.197, A:N.197, A:K.199, A:Q.228
- Water bridges: A:T.31, A:K.35, A:G.200, A:G.200, A:G.200, A:G.200
- pi-Cation interactions: A:K.199
ANP.16: 14 residues within 4Å:- Chain B: T.31, N.32, A.33, G.34, K.35, T.36, T.37, K.57, D.72, E.138, N.197, K.199, Q.228
- Ligands: MG.17
23 PLIP interactions:23 interactions with chain B- Hydrogen bonds: B:T.31, B:N.32, B:N.32, B:G.34, B:K.35, B:K.35, B:T.36, B:T.37, B:T.37, B:K.57, B:N.197, B:N.197, B:K.199, B:Q.228
- Water bridges: B:T.31, B:K.35, B:T.36, B:T.36, B:G.200, B:G.200, B:G.200, B:G.200
- pi-Cation interactions: B:K.199
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: T.36, K.57, D.72, E.138
- Ligands: ANP.2
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.36, A:D.72, A:E.138, H2O.9
MG.17: 5 residues within 4Å:- Chain B: T.36, K.57, D.72, E.138
- Ligands: ANP.16
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.36, B:D.72, B:E.138, H2O.21
- 2 x NO3: NITRATE ION(Non-functional Binders)
NO3.5: 10 residues within 4Å:- Chain A: F.25, S.27, A.28, K.35, G.139, A.140, G.141, G.142, L.143, M.153
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.27, A:A.28, A:K.35, A:A.140, A:G.142
- Water bridges: A:G.141, A:G.141
NO3.19: 10 residues within 4Å:- Chain B: F.25, S.27, A.28, K.35, G.139, A.140, G.141, G.142, L.143, M.153
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.27, B:A.28, B:K.35, B:A.140, B:G.142
- Water bridges: B:G.141, B:G.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porebski, P.J. et al., Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members. Febs J. (2012)
- Release Date
- 2011-03-30
- Peptides
- Dethiobiotin synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porebski, P.J. et al., Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members. Febs J. (2012)
- Release Date
- 2011-03-30
- Peptides
- Dethiobiotin synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A