SMTL ID : 3qz4.1 (1 other biounit)

Crystal structure of an Endo-1,4-beta-xylanase D (BT_3675) from Bacteroides thetaiotaomicron VPI-5482 at 1.74 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: V.142, H.257 No protein-ligand interaction detected (PLIP) UNX.2: 1 residues within 4Å: Chain A: V.144 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 8 residues within 4Å: Chain A: D.17, W.41, W.78, Q.138, I.140, E.196, T.216, R.289 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.138, A:R.289, A:R.289 Water bridges: A:Q.138, A:Q.138, A:Y.221 Salt bridges: A:D.17, A:E.196, A:E.196

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: S.131, P.133, W.157, I.174, E.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.176 Water bridges: A:S.131 EDO.5: 2 residues within 4Å: Chain A: Y.45, V.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.65 EDO.6: 2 residues within 4Å: Chain A: G.13, F.14 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.277, A:N.277, A:N.277 EDO.7: 4 residues within 4Å: Chain A: S.44, E.65, M.66, N.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.44, A:E.65, A:E.65, A:N.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an Endo-1,4-beta-xylanase D (BT_3675) from Bacteroides thetaiotaomicron VPI-5482 at 1.74 A resolution. To be published

Release Date

2011-04-06

Peptides

Endo-1,4-beta-xylanase D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase D

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