SMTL ID : 3qz8.1

TT-4 ternary complex of Dpo4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.7, F.8, D.9, D.105, K.159 Ligands: CA.2, DCP.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.7, A:F.8, A:D.105 CA.2: 8 residues within 4Å: Chain A: D.7, S.103, D.105, E.106, K.159 Chain B: G.13 Ligands: CA.1, DCP.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.105, H2O.3 CA.3: 4 residues within 4Å: Chain A: A.181, D.182, I.186, G.187 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.181, A:I.186, H2O.2, H2O.4, H2O.6

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.4: 18 residues within 4Å: Chain A: D.7, F.8, D.9, Y.10, F.11, Y.12, A.44, T.45, Y.48, R.51, A.57, I.104, D.105, K.159 Chain B: G.13 Chain C: G.5 Ligands: CA.1, CA.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.12, A:A.57 Hydrogen bonds: A:Y.10, A:F.11, A:Y.12 Water bridges: A:Y.12, A:K.159, A:K.159 Salt bridges: A:R.51, A:R.51, A:K.159, A:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., The y-family DNA polymerase dpo4 uses a template slippage mechanism to create single-base deletions. J.Bacteriol. (2011)

Release Date

2011-04-06

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase IV

Related Entries With Identical Sequence