SMTL ID : 3r0n.1

Crystal Structure of the Immunoglobulin variable domain of Nectin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: P.64, S.65 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:P.64, H2O.36, H2O.37, H2O.40, H2O.55, H2O.59 MG.3: 2 residues within 4Å: Chain B: P.64, S.65 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:P.64, H2O.170, H2O.171, H2O.174, H2O.189, H2O.193

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: Q.2, D.3 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: Q.2, D.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samanta, D. et al., Structure of Nectin-2 reveals determinants of homophilic and heterophilic interactions that control cell-cell adhesion. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2011-04-27

Peptides

Poliovirus receptor-related protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Poliovirus receptor-related protein 2

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