SMTL ID : 3r0o.1

Crystal structure of carnitinyl-CoA hydratase from Mycobacterium avium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.51, Y.101, H.104, I.106, T.110, A.128, S.129 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.106, A:T.110, A:A.128 Water bridges: A:H.104, A:K.221, A:K.221 EDO.2: 5 residues within 4Å: Chain A: R.185, W.186 Chain B: R.185 Chain C: R.185, W.186 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:R.185, A:R.185, B:R.185 EDO.3: 7 residues within 4Å: Chain B: L.51, Y.101, H.104, I.106, T.110, A.128, S.129 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.106, B:T.110, B:A.128 Water bridges: B:H.104, B:K.221, B:K.221 EDO.4: 5 residues within 4Å: Chain B: N.190, E.191, L.205, R.208 Chain C: E.170 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Water bridges: C:E.170, B:L.205 Hydrogen bonds: B:R.208, B:R.208 EDO.6: 7 residues within 4Å: Chain C: L.51, Y.101, H.104, I.106, T.110, A.128, S.129 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:I.106, C:T.110, C:A.128 Water bridges: C:K.221, C:K.221

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain B: A.77, F.98, G.121, E.124, E.144, I.150, G.152, A.153, F.246 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.77, B:G.121, B:E.144, B:G.152

1 x K: POTASSIUM ION(Non-covalent)

K.7: 3 residues within 4Å: Chain C: E.124, E.144, G.152 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-03-16

Peptides

Carnitinyl-CoA dehydratase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Carnitinyl-CoA dehydratase