SMTL ID : 3r0r.4 (5 other biounits)

The 2.3 A structure of porcine circovirus 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-pentamer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.84, R.181, Q.183, T.184, A.185, G.186 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: K.95, Y.155, F.156, T.157, N.172 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: C.103, S.104, P.105 Chain E: G.109, D.110, Y.202 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: N.173, R.175, N.176 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain B: R.84, R.181, Q.183, T.184, A.185, G.186 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain B: K.95, Y.155, F.156, T.157, N.172 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: G.109, D.110, Y.202 Chain B: C.103, S.104, P.105 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: N.173, R.175, N.176 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain C: R.84, R.181, Q.183, T.184, A.185, G.186 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain C: K.95, Y.155, F.156, T.157, N.172 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain B: G.109, D.110, Y.202 Chain C: C.103, S.104, P.105 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain C: N.173, R.175, N.176 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain D: R.84, R.181, Q.183, T.184, A.185, G.186 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain D: K.95, Y.155, F.156, T.157, N.172 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain C: G.109, D.110, Y.202 Chain D: C.103, S.104, P.105 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain D: N.173, R.175, N.176 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain E: R.84, R.181, Q.183, T.184, A.185, G.186 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain E: K.95, Y.155, F.156, T.157, N.172 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain D: G.109, D.110, Y.202 Chain E: C.103, S.104, P.105 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain E: N.173, R.175, N.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khayat, R. et al., The 2.3-angstrom structure of porcine circovirus 2. J.Virol. (2011)

Release Date

2011-06-15

Peptides

Porcine circovirus 2 (PCV2) capsid protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Porcine circovirus 2 (PCV2) capsid protein

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