SMTL ID : 3r12.1

Crystal structure of a Deoxyribose-phosphate aldolase (TM_1559) from THERMOTOGA MARITIMA at 1.75 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 14 residues within 4Å: Chain A: T.50, K.53, K.191, S.193, T.194, G.195, F.196, S.222, G.223, R.226, G.243, T.244, S.245 Ligands: PGO.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.50 Hydrogen bonds: A:S.222, A:G.223, A:S.245 Water bridges: A:T.50, A:T.50, A:K.220, A:G.224, A:G.224, A:R.226 Salt bridges: A:K.53, A:K.191, A:R.226 CIT.4: 11 residues within 4Å: Chain B: K.191, S.193, T.194, G.195, F.196, S.222, G.223, R.226, G.243, T.244, S.245 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.222, B:S.245 Water bridges: B:T.50, B:T.50, B:T.50, B:K.220, B:G.224, B:R.226, B:R.226, B:T.244 Salt bridges: B:K.53, B:K.191, B:R.226

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.2: 4 residues within 4Å: Chain A: K.53, R.226, S.245 Ligands: CIT.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.53 Water bridges: A:G.195, A:R.226

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.11, E.141, W.142, E.143, Y.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.11, A:E.143, A:Y.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Deoxyribose-phosphate aldolase (TM_1559) from THERMOTOGA MARITIMA at 1.75 A resolution. To be published

Release Date

2011-04-20

Peptides

Deoxyribose-phosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deoxyribose-phosphate aldolase

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