SMTL ID : 3r1j.1

Crystal structure of Alpha-ketoglutarate-dependent taurine dioxygenase from Mycobacterium avium, native form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: R.40, L.43, L.69, A.114, A.115, E.197, R.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.40, A:E.197 EDO.5: 2 residues within 4Å: Chain B: R.52, H.53 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.52 EDO.6: 11 residues within 4Å: Chain B: T.104, Y.112, T.135, R.193, A.202, L.203, L.204, N.252, R.253, A.254, T.255 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.112, B:Y.112, B:T.135, B:T.255 EDO.9: 7 residues within 4Å: Chain C: R.40, L.43, L.69, A.114, A.115, E.197, R.253 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.40, C:E.197 EDO.13: 2 residues within 4Å: Chain D: R.52, H.53 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.52 EDO.14: 11 residues within 4Å: Chain D: T.104, Y.112, T.135, R.193, A.202, L.203, L.204, N.252, R.253, A.254, T.255 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Y.112, D:Y.112, D:T.135, D:T.255

4 x FE: FE (III) ION(Non-covalent)

FE.2: 3 residues within 4Å: Chain A: H.103, D.105, H.257 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.103, A:D.105, A:H.257, H2O.1, H2O.6, H2O.6 FE.7: 3 residues within 4Å: Chain B: H.103, D.105, H.257 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.103, B:D.105, B:H.257, H2O.12, H2O.12 FE.10: 3 residues within 4Å: Chain C: H.103, D.105, H.257 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.103, C:D.105, C:H.257, H2O.14, H2O.19, H2O.19 FE.15: 3 residues within 4Å: Chain D: H.103, D.105, H.257 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.103, D:D.105, D:H.257, H2O.25, H2O.25

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: L.131, R.239 Chain C: L.131, R.239 Ligands: CL.11 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: H.53 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: L.131, R.239 Chain D: L.131, R.239 Ligands: CL.16 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: L.131, R.239 Chain C: L.131, R.239 Ligands: CL.3 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain C: H.53 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain B: L.131, R.239 Chain D: L.131, R.239 Ligands: CL.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-04-06

Peptides

Alpha-ketoglutarate-dependent taurine dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Alpha-ketoglutarate-dependent taurine dioxygenase