SMTL ID : 3r2q.1

Crystal Structure Analysis of yibF from E. Coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 14 residues within 4Å: Chain A: S.9, F.11, P.33, Y.34, G.47, K.48, V.49, P.50, D.62, S.63, P.64, L.105 Chain B: R.125, K.129 17 PLIP interactions: 12 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.11 Hydrogen bonds: A:Y.34, A:Y.34, A:V.49, A:V.49, A:D.62, A:D.62, A:S.63 Water bridges: A:K.48, A:K.48, A:D.62, B:R.125, B:Q.126, B:Q.126 Salt bridges: A:K.48, B:R.125, B:K.129 GSH.5: 14 residues within 4Å: Chain A: R.125, K.129 Chain B: S.9, F.11, P.33, Y.34, G.47, K.48, V.49, P.50, D.62, S.63, P.64, L.105 17 PLIP interactions: 5 interactions with chain A, 12 interactions with chain B Water bridges: A:R.125, A:Q.126, A:Q.126, B:K.48, B:K.48, B:D.62 Salt bridges: A:R.125, A:K.129, B:K.48 Hydrophobic interactions: B:F.11 Hydrogen bonds: B:Y.34, B:Y.34, B:V.49, B:V.49, B:D.62, B:D.62, B:S.63

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.127, N.131, A.171, P.172, G.173, W.174 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.131, A:N.131, A:G.173 Water bridges: A:R.127, A:N.131, A:G.173, A:R.178 Salt bridges: A:R.127 PO4.6: 6 residues within 4Å: Chain B: R.127, N.131, A.171, P.172, G.173, W.174 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.131, B:N.131, B:G.173 Water bridges: B:R.127, B:N.131, B:G.173, B:R.178 Salt bridges: B:R.127

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.13, F.189, F.194, E.198, P.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.13, A:R.13, A:F.194 Water bridges: A:G.163, A:E.198 EDO.4: 3 residues within 4Å: Chain A: F.167, R.168, R.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.167, A:R.168 Water bridges: A:R.169 EDO.7: 5 residues within 4Å: Chain B: R.13, F.189, F.194, E.198, P.199 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.13, B:R.13, B:F.194 Water bridges: B:G.163, B:E.198 EDO.8: 3 residues within 4Å: Chain B: F.167, R.168, R.169 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.167, B:R.168 Water bridges: B:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ladner, J.E. et al., Structural and Functional Genomics of YibF, a Glutathione Transferase Homologue from Escherichia coli. to be published

Release Date

2012-03-14

Peptides

Uncharacterized GST-like protein yibF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized GST-like protein yibF