SMTL ID : 3r2u.1

2.1 Angstrom Resolution Crystal Structure of Metallo-beta-lactamase from Staphylococcus aureus subsp. aureus COL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.80, H.143, D.169 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.80, A:H.143, A:D.169, H2O.1, H2O.1, H2O.2 FE.2: 3 residues within 4Å: Chain B: H.80, H.143, D.169 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.80, B:H.143, B:D.169, H2O.15, H2O.22, H2O.22 FE.6: 3 residues within 4Å: Chain C: H.80, H.143, D.169 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.80, C:H.143, C:D.169, H2O.28, H2O.28, H2O.33 FE.9: 3 residues within 4Å: Chain D: H.80, H.143, D.169 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.80, D:H.143, D:D.169, H2O.37, H2O.37, H2O.43

5 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: E.338, D.362 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.338, B:D.362, H2O.23, H2O.23, H2O.23 MG.7: 1 residues within 4Å: Chain C: H.118 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:H.118, H2O.26, H2O.29, H2O.33, H2O.34 MG.8: 1 residues within 4Å: Chain C: H.312 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:H.312, H2O.29, H2O.36, H2O.36, H2O.36 MG.10: 2 residues within 4Å: Chain D: H.312, E.314 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:H.312, D:E.314, H2O.41, H2O.43, H2O.45, H2O.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: P.210, D.211 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.1 Angstrom Resolution Crystal Structure of Metallo-beta-lactamase Family Protein from Staphylococcus aureus subsp. aureus COL. TO BE PUBLISHED

Release Date

2011-03-23

Peptides

Metallo-beta-lactamase family protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Metallo-beta-lactamase family protein