SMTL ID : 3r34.1

Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant E73D complexed with CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 22 residues within 4Å: Chain A: Q.58, L.62, V.63, G.65, F.100, F.101, R.102, P.103 Chain B: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: H.117, G.119, S.120, T.121, T.122 Ligands: EDO.2 20 PLIP interactions: 11 interactions with chain B, 5 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: B:V.92, B:Q.94, B:A.145, A:F.100 Hydrogen bonds: B:G.93, B:P.148, B:R.150, D:S.120, D:T.121, D:T.121, D:T.122, D:T.122, A:F.100 Water bridges: B:G.93, B:R.150, A:R.102 Salt bridges: B:R.150, A:R.102 pi-Cation interactions: B:R.150, B:R.150 COA.3: 21 residues within 4Å: Chain A: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain B: Q.58, L.62, V.63, G.65, F.100, F.101, R.102, P.103 Chain C: H.117, G.119, S.120, T.121, T.122 22 PLIP interactions: 4 interactions with chain C, 5 interactions with chain B, 13 interactions with chain A Hydrogen bonds: C:S.120, C:T.121, C:T.122, B:F.100, A:G.93, A:P.148, A:R.150 Salt bridges: C:H.117, B:R.102, A:R.150 Hydrophobic interactions: B:F.100, A:V.92, A:Q.94, A:A.145 Water bridges: B:R.102, B:V.104, A:G.93, A:R.147, A:R.147, A:R.150 pi-Cation interactions: A:R.150, A:R.150 COA.4: 22 residues within 4Å: Chain B: H.117, G.119, S.120, T.121, T.122 Chain C: Q.58, L.62, V.63, G.65, F.100, F.101, R.102, P.103 Chain D: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Ligands: EDO.5 21 PLIP interactions: 11 interactions with chain D, 5 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: D:V.92, D:Q.94, D:A.145, C:F.100 Hydrogen bonds: D:G.93, D:P.148, D:R.150, C:F.100, B:S.120, B:T.121, B:T.122 Water bridges: D:G.93, D:R.150, C:Y.68, C:R.102, B:T.121, B:T.121 Salt bridges: D:R.150, C:R.102 pi-Cation interactions: D:R.150, D:R.150 COA.6: 21 residues within 4Å: Chain A: H.117, G.119, S.120, T.121, T.122 Chain C: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: Q.58, L.62, V.63, G.65, F.100, F.101, R.102, P.103 23 PLIP interactions: 5 interactions with chain A, 5 interactions with chain D, 13 interactions with chain C Hydrogen bonds: A:S.120, A:T.121, A:T.121, A:T.122, D:F.100, C:G.93, C:P.148, C:R.150 Salt bridges: A:H.117, D:R.102, C:R.150 Hydrophobic interactions: D:F.100, C:V.92, C:Q.94, C:A.145 Water bridges: D:R.102, D:V.104, C:G.93, C:R.147, C:R.147, C:R.150 pi-Cation interactions: C:R.150, C:R.150

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.58, H.64, G.65 Chain B: D.73, M.74, T.77 Ligands: COA.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.58, A:H.64, A:G.65 Water bridges: B:T.77, B:E.78 EDO.5: 7 residues within 4Å: Chain C: Q.58, H.64, G.65 Chain D: D.73, M.74, T.77 Ligands: COA.4 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.58, C:G.65 Water bridges: D:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, F. et al., The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry (2012)

Release Date

2012-03-28

Peptides

4-hydroxybenzoyl-CoA thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

4-hydroxybenzoyl-CoA thioesterase

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