SMTL ID : 3r4r.1 (1 other biounit)

Crystal structure of a fimbrial assembly protein (BDI_3522) from Parabacteroides distasonis ATCC 8503 at 2.38 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.226, V.227, T.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.227, A:T.228 Water bridges: A:T.224 SO4.2: 2 residues within 4Å: Chain A: T.38, T.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.39, A:T.39

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: Y.36, Q.167, S.169, K.171, G.264, N.265, E.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.36, A:Y.36, A:S.169 EDO.4: 7 residues within 4Å: Chain A: P.136, V.137, L.219, A.220, P.222, F.229, Y.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.137, A:A.220, A:Y.230 EDO.5: 5 residues within 4Å: Chain A: G.196, F.216, D.218, K.239, E.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.218, A:E.240, A:E.240 EDO.6: 6 residues within 4Å: Chain A: P.113, K.130, T.131, I.132, A.133, K.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.130, A:K.130, A:A.133 EDO.7: 3 residues within 4Å: Chain A: Y.120, K.147, F.206 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., A Distinct Type of Pilus from the Human Microbiome. Cell (2016)

Release Date

2011-03-30

Peptides

hypothetical fimbrial assembly protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

hypothetical fimbrial assembly protein

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