SMTL ID : 3r6b.1

Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: R.34 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.16, A:W.17, A:R.34 EDO.2: 5 residues within 4Å: Chain A: S.18, P.19, W.20, R.34 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.20, A:R.34 EDO.3: 4 residues within 4Å: Chain A: C.23, I.32, C.60, K.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.23, A:K.62 EDO.4: 1 residues within 4Å: Chain A: N.39 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.39, A:N.39 EDO.5: 3 residues within 4Å: Chain A: R.36, E.51, G.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.36, A:R.36 EDO.6: 2 residues within 4Å: Chain A: T.99, Q.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.101 EDO.7: 3 residues within 4Å: Chain A: W.71, R.93, V.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.93, A:R.93 EDO.8: 2 residues within 4Å: Chain A: P.73, W.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.74 Water bridges: A:G.72, A:W.74, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klenotic, P.A. et al., Expression, purification and structural characterization of functionally replete thrombospondin-1 type 1 repeats in a bacterial expression system. Protein Expr.Purif. (2011)

Release Date

2011-08-10

Peptides

Thrombospondin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thrombospondin-1