SMTL ID : 3r6t.1

Rat catechol o-methyltransferase in complex with the bisubstrate inhibitor 4'-fluoro-4,5-dihydroxy-biphenyl-3-carboxylic acid {(E)-3-[(2S,4R,5R)-4-hydroxy-5-(6-methyl-purin-9-yl)-tetrahydro-furan-2-yl]-allyl}-amide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.141, K.144, D.169, N.170 Ligands: LU1.7 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:D.169, H2O.9

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.41, V.42, Y.71, S.72 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: D.44, A.45, Y.200 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: I.91, Q.120, R.146 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: P.82, G.83, R.85, K.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.83 Water bridges: A:A.84 Salt bridges: A:R.85, A:K.111 SO4.6: 4 residues within 4Å: Chain A: D.3, T.4, K.5, R.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.5 Salt bridges: A:R.8

1 x LU1: 4'-fluoro-4,5-dihydroxy-N-{(2E)-3-[(2S,4R,5R)-4-hydroxy-5-(6-methyl-9H-purin-9-yl)tetrahydrofuran-2-yl]prop-2-en-1-yl}biphenyl-3-carboxamide(Non-covalent)

LU1.7: 24 residues within 4Å: Chain A: W.38, M.40, G.66, M.89, E.90, I.91, N.92, G.117, A.118, S.119, Q.120, D.141, H.142, W.143, K.144, R.146, D.169, N.170, V.173, P.174, L.198, E.199 Ligands: MG.1, NHE.9 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.173, A:P.174, A:L.198, A:L.198 Hydrogen bonds: A:I.91, A:N.92, A:S.119, A:D.141, A:W.143, A:K.144, A:K.144, A:N.170 Water bridges: A:M.40, A:N.41, A:N.92 pi-Stacking: A:W.38, A:W.143, A:W.143, A:W.143

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.8: 6 residues within 4Å: Chain A: L.152, E.155, Y.182, S.188, F.189, Y.212 No protein-ligand interaction detected (PLIP)

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.9: 4 residues within 4Å: Chain A: E.37, W.38, M.201 Ligands: LU1.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.38 Hydrogen bonds: A:W.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellermann, M. et al., Catechol-O-methyltransferase in complex with substituted 3'-deoxyribose bisubstrate inhibitors. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-02-01

Peptides

Catechol O-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Catechol O-methyltransferase

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