SMTL ID : 3r7c.1 (2 other biounits)

The structure of a hexahestidine-tagged form of augmenter of liver regeneration reveals a novel Cd(2)Cl(4)O(6) cluster that aids in crystal packing

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 25 residues within 4Å: Chain A: R.33, E.34, G.37, R.38, T.40, W.41, H.45, F.70, Y.74, C.76, C.79, A.80, E.81, I.83, C.105, H.108, N.109, V.111, N.112, L.115, K.117, F.120, R.128, W.129 Chain B: D.28 26 PLIP interactions: 23 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.40, A:W.41, A:W.41, A:F.70, A:Y.74, A:I.83 Hydrogen bonds: A:W.41, A:W.41, A:A.80, A:E.81, A:N.112, A:N.112, A:K.117, A:R.128, B:D.28 Water bridges: A:R.33, A:R.33, A:E.34, B:D.28, B:D.28 Salt bridges: A:R.38, A:H.108, A:K.117 pi-Stacking: A:H.108, A:F.120, A:F.120 FAD.10: 23 residues within 4Å: Chain B: R.33, E.34, G.37, R.38, T.40, W.41, H.45, F.70, Y.74, C.79, I.83, C.105, H.108, N.109, V.111, N.112, K.114, L.115, K.117, F.120, V.125, R.128, W.129 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:W.41, B:W.41, B:W.41, B:F.70 Hydrogen bonds: B:W.41, B:W.41, B:C.105, B:H.108, B:N.112, B:K.114, B:K.117, B:R.128 Water bridges: B:K.114 Salt bridges: B:R.38, B:H.108, B:K.117 pi-Stacking: B:Y.74, B:H.108, B:F.120, B:F.120

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: E.58, Q.61 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: E.58, D.62 Chain B: K.72 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: H.68, K.72 Ligands: CD.4, CD.5, CL.7, CL.8, CL.9 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: D.88 Ligands: CD.4, CD.5, CL.6, CL.8, CL.9 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain A: K.72, R.84, D.88 Ligands: CD.4, CL.6, CL.7 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: K.72 Ligands: CD.5, CL.6, CL.7 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: Q.31, N.39 Ligand excluded by PLIP

3 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.4: 5 residues within 4Å: Chain A: D.88 Ligands: CD.5, CL.6, CL.7, CL.8 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.88, A:D.88, H2O.1 CD.5: 4 residues within 4Å: Ligands: CD.4, CL.6, CL.7, CL.9 No protein-ligand interaction detected (PLIP) CD.11: 2 residues within 4Å: Chain B: D.121, S.123 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.121, B:D.121, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Florence, Q.J. et al., The structure of a hexahestidine-tagged form of augmenter of liver regeneration reveals a novel Cd(2)Cl(4)O(6) cluster that aids in crystal packing. To be Published

Release Date

2012-03-28

Peptides

FAD-linked sulfhydryl oxidase ALR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

FAD-linked sulfhydryl oxidase ALR

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