SMTL ID : 3r8x.2 (1 other biounit)

Crystal Structure of Methionyl-tRNA Formyltransferase from Yersinia pestis complexed with L-methionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x MET: METHIONINE(Non-covalent)

MET.1: 9 residues within 4Å: Chain A: V.91, A.93, Y.94, G.95, N.112, H.114, G.123, D.150 Ligands: GOL.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:N.112, A:D.150 Water bridges: A:H.114, M.1 Salt bridges: A:H.114 MET.7: 9 residues within 4Å: Chain B: V.91, A.93, Y.94, G.95, N.112, H.114, G.123, D.150 Ligands: GOL.11 5 PLIP interactions: 2 Ligand-Ligand interactions, 3 interactions with chain B Water bridges: M.7, M.7 Hydrogen bonds: B:N.112, B:D.150 Salt bridges: B:H.114

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: E.165, E.228, Q.253, A.254, T.288 Ligands: MOE.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.228, A:Q.253, A:A.254, A:T.288, A:T.288 TRS.8: 6 residues within 4Å: Chain B: E.165, E.228, Q.253, A.254, T.288 Ligands: MOE.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.253, B:A.254, B:T.288 Water bridges: B:E.165

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: E.202, T.203, A.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.205 GOL.5: 6 residues within 4Å: Chain A: F.18, A.93, H.114, G.115, P.126 Ligands: MET.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:G.115, M.1 Water bridges: M.1 GOL.6: 3 residues within 4Å: Chain A: P.258, H.270, Q.277 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.258, A:Q.277 Water bridges: A:D.272, A:H.274 GOL.9: 3 residues within 4Å: Chain B: E.202, T.203, A.205 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.202, B:A.205 GOL.11: 6 residues within 4Å: Chain B: F.18, A.93, H.114, G.115, P.126 Ligands: MET.7 3 PLIP interactions: 1 Ligand-Ligand interactions, 2 interactions with chain B Water bridges: M.7 Hydrogen bonds: B:H.114, B:G.115 GOL.12: 3 residues within 4Å: Chain B: P.258, H.270, Q.277 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.258, B:Q.277 Water bridges: B:D.272, B:H.274

2 x MOE: METHOXY-ETHOXYL(Non-covalent)

MOE.4: 7 residues within 4Å: Chain A: E.165, T.167, I.231, R.232, W.252, Q.253 Ligands: TRS.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.165 MOE.10: 7 residues within 4Å: Chain B: E.165, T.167, I.231, R.232, W.252, Q.253 Ligands: TRS.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Methionyl-tRNA Formyltransferase from Yersinia pestis complexed with L-methionine. To be Published

Release Date

2011-04-13

Peptides

Methionyl-tRNA formyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Methionyl-tRNA formyltransferase

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