SMTL ID : 3r9m.1

Crystal structure of the Brox Bro1 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.157, V.186, Q.190, P.355 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.157, A:K.160, A:K.160, A:E.183, A:E.183, A:E.354 EDO.2: 3 residues within 4Å: Chain A: K.85, F.375, D.376 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.85, A:D.376 EDO.3: 3 residues within 4Å: Chain A: N.75, P.362, T.363 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.363, A:T.363 Water bridges: A:N.75 EDO.4: 1 residues within 4Å: Chain A: K.143 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.143, A:K.143 EDO.5: 4 residues within 4Å: Chain A: Y.22, I.89, Q.90, N.91 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.90, A:N.91 Water bridges: A:N.21, A:N.21, A:Q.90, A:Q.107, A:Q.107 EDO.6: 3 residues within 4Å: Chain A: S.40, S.41, R.44 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: D.226, R.241, K.242, H.245, L.289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.241, A:K.242, A:K.242 EDO.8: 7 residues within 4Å: Chain A: S.19, F.20, N.21, S.32, C.35, N.36, R.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.19, A:S.32, A:N.36, A:R.39

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.9: 5 residues within 4Å: Chain A: K.126, Y.127, R.130 Ligands: FMT.11, FMT.12 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.126, A:R.130 FMT.10: 3 residues within 4Å: Chain A: P.11, L.12, K.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.12 Water bridges: A:K.126 FMT.11: 8 residues within 4Å: Chain A: D.51, L.52, C.54, W.123, Y.127, R.130 Ligands: FMT.9, FMT.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.54, A:R.130, A:R.130 Water bridges: A:Y.127 FMT.12: 8 residues within 4Å: Chain A: L.48, F.49, D.51, L.52, C.54, W.123 Ligands: FMT.9, FMT.11 No protein-ligand interaction detected (PLIP) FMT.13: 4 residues within 4Å: Chain A: K.60, A.63, Y.124, F.358 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.124 FMT.14: 3 residues within 4Å: Chain A: S.19, N.21, Y.23 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.19 Water bridges: A:S.19, A:N.21, A:N.21 FMT.15: 2 residues within 4Å: Chain A: A.265, D.267 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.333, A:Y.333 FMT.16: 5 residues within 4Å: Chain A: C.290, K.291, K.304, P.305, S.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.304, A:S.306 FMT.17: 2 residues within 4Å: Chain A: K.224, H.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.227 Water bridges: A:Q.223 FMT.18: 2 residues within 4Å: Chain A: K.173, R.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.180 Water bridges: A:R.180 FMT.19: 6 residues within 4Å: Chain A: G.209, L.210, A.213, K.347, A.348, N.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.349 Water bridges: A:G.209, A:N.349, A:N.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sette, P. et al., The Phe105 Loop of Alix Bro1 Domain Plays a Key Role in HIV-1 Release. Structure (2011)

Release Date

2011-09-14

Peptides

BRO1 domain-containing protein BROX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BRO1 domain-containing protein BROX