SMTL ID : 3r9s.1

Structure of a carnitinyl-CoA dehydratase from Mycobacterium avium 104

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 10 residues within 4Å: Chain A: A.71, I.76, L.82, G.115, E.118, E.138, I.144, A.145, A.146, A.147 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.71, A:I.76, A:L.82 Hydrogen bonds: A:G.115, A:A.146, A:A.147 BEZ.4: 10 residues within 4Å: Chain C: A.71, I.76, L.82, G.115, E.118, E.138, I.144, A.145, A.146, A.147 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:A.71, C:I.76, C:L.82 Hydrogen bonds: C:G.115, C:E.138, C:A.146, C:A.147 Water bridges: C:E.138

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: L.45, Y.95, H.98, I.100, T.104, A.122, S.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.95, A:H.98, A:I.100, A:T.104 EDO.3: 7 residues within 4Å: Chain B: Y.95, H.98, F.99, I.100, T.104, A.122, K.215 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.100, B:I.100, B:K.215 EDO.5: 7 residues within 4Å: Chain C: L.45, Y.95, H.98, I.100, T.104, A.122, S.123 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:I.100, C:T.104, C:A.122 Water bridges: C:K.215 EDO.6: 7 residues within 4Å: Chain C: L.121, R.152, E.155, Q.156, Y.219, V.226, D.229 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.121, C:R.152, C:Q.156, C:D.229 Water bridges: C:E.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-04-13

Peptides

Carnitinyl-CoA dehydratase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Carnitinyl-CoA dehydratase