- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.2: 23 residues within 4Å:- Chain A: P.18, N.19, V.20, G.21, K.22, S.23, T.24, I.37, S.38, P.39, A.41, G.42, T.43, T.44, G.67, N.129, K.130, D.132, K.133, S.161, A.162, L.163
- Ligands: MG.1
26 PLIP interactions:26 interactions with chain A- Hydrogen bonds: A:N.19, A:V.20, A:G.21, A:K.22, A:K.22, A:S.23, A:T.24, A:T.24, A:S.38, A:S.38, A:G.42, A:T.43, A:T.44, A:G.67, A:N.129, A:K.130, A:K.130, A:S.161, A:A.162, A:L.163
- Water bridges: A:S.23, A:S.23, A:T.24, A:G.42, A:K.133
- Salt bridges: A:D.132
GNP.12: 23 residues within 4Å:- Chain C: P.18, N.19, V.20, G.21, K.22, S.23, T.24, I.37, S.38, P.39, A.41, G.42, T.43, T.44, G.67, N.129, K.130, D.132, K.133, S.161, A.162, L.163
- Ligands: MG.11
28 PLIP interactions:28 interactions with chain C- Hydrogen bonds: C:N.19, C:V.20, C:G.21, C:K.22, C:K.22, C:S.23, C:T.24, C:T.24, C:S.38, C:S.38, C:G.42, C:T.43, C:T.44, C:G.67, C:N.129, C:K.130, C:K.130, C:S.161, C:A.162, C:L.163
- Water bridges: C:S.23, C:S.23, C:T.24, C:G.42, C:T.43, C:T.43, C:K.133
- Salt bridges: C:D.132
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 1 residues within 4Å:- Chain A: W.286
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:W.286
ACT.4: 5 residues within 4Å:- Chain A: E.214
- Chain B: G.25, A.26
- Chain D: C.1, A.2
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.213
ACT.5: 1 residues within 4Å:- Chain A: A.101
No protein-ligand interaction detected (PLIP)ACT.6: 4 residues within 4Å:- Chain A: E.70, E.111, N.115, F.116
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.116
- Hydrogen bonds: A:E.70
- Salt bridges: A:R.108
ACT.10: 3 residues within 4Å:- Chain B: G.25, A.26, U.27
No protein-ligand interaction detected (PLIP)ACT.13: 1 residues within 4Å:- Chain C: W.286
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:W.286
ACT.14: 5 residues within 4Å:- Chain B: C.1, A.2
- Chain C: E.214
- Chain D: G.25, A.26
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.213
ACT.15: 1 residues within 4Å:- Chain C: A.101
No protein-ligand interaction detected (PLIP)ACT.16: 4 residues within 4Å:- Chain C: E.70, E.111, N.115, F.116
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.116
- Hydrogen bonds: C:E.70, C:E.111
- Salt bridges: C:R.108
ACT.20: 3 residues within 4Å:- Chain D: G.25, A.26, U.27
No protein-ligand interaction detected (PLIP)- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.7: 4 residues within 4Å:- Chain A: V.76, H.79, S.80, R.301
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.301
- Hydrogen bonds: A:R.301
MRD.8: 2 residues within 4Å:- Chain A: H.148, T.155
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:H.148
MRD.17: 4 residues within 4Å:- Chain C: V.76, H.79, S.80, R.301
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:R.301
- Hydrogen bonds: C:R.301
MRD.18: 2 residues within 4Å:- Chain C: H.148, T.155
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:H.148
- 2 x CA: CALCIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tu, C. et al., The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-06-22
- Peptides
- GTPase Era: AC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tu, C. et al., The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-06-22
- Peptides
- GTPase Era: AC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
A