SMTL ID : 3rab.1

GPPNHP-BOUND RAB3A AT 2.0 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.19, T.37, D.60 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.19, A:T.37, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: N.13, S.14, S.15, V.16, G.17, K.18, T.19, S.20, F.30, T.31, P.32, A.33, F.34, S.36, T.37, A.62, G.63, N.118, K.119, D.121, M.122, S.148, A.149, K.150 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:S.15, A:V.16, A:G.17, A:K.18, A:K.18, A:T.19, A:S.20, A:S.20, A:T.31, A:T.37, A:T.37, A:G.63, A:N.118, A:K.119, A:K.119, A:A.149, A:K.150 Water bridges: A:K.18, A:T.19, A:V.35, A:S.36, A:T.37, A:Q.64 Salt bridges: A:D.121 pi-Stacking: A:F.30, A:F.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dumas, J.J. et al., Structural basis of activation and GTP hydrolysis in Rab proteins. Structure Fold.Des. (1999)

Release Date

1999-04-16

Peptides

PROTEIN (RAB3A): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (RAB3A)