SMTL ID : 3rau.1

Crystal structure of the HD-PTP Bro1 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: L.14, D.15, I.101, W.239 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.14, A:W.239 Hydrogen bonds: A:D.15 ACT.2: 4 residues within 4Å: Chain A: Q.211, D.214, Y.215, E.218 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.215, A:E.218 Hydrogen bonds: A:Q.211 Water bridges: A:D.214, A:E.218 ACT.3: 5 residues within 4Å: Chain A: K.217, I.247, Y.248, A.251, K.281 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.247, A:Y.248 Salt bridges: A:K.217, A:K.281 ACT.4: 4 residues within 4Å: Chain A: R.8, M.9, D.134, R.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.134 Water bridges: A:R.136 Salt bridges: A:R.136 ACT.8: 3 residues within 4Å: Chain B: L.14, D.15, F.102 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.102 Hydrogen bonds: B:D.15, B:D.15 ACT.9: 3 residues within 4Å: Chain B: Q.211, D.214, E.218 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.218 Hydrogen bonds: B:Q.211, B:D.214 ACT.10: 6 residues within 4Å: Chain B: K.217, I.247, Y.248, A.251, K.281 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.247, B:Y.248 Salt bridges: B:K.217, B:K.281 ACT.11: 4 residues within 4Å: Chain B: H.78, K.113, Q.116, Y.158 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.158, B:Y.158 Water bridges: B:Q.116 Salt bridges: B:H.78

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: Q.81, G.87, S.88, Q.90, K.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.88, A:S.88, A:K.113 EDO.6: 4 residues within 4Å: Chain A: K.361, V.363 Chain B: R.200, L.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.200, B:R.200

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain B: A.210, V.213, K.217, A.251, A.254, H.255, V.335 Ligands: ACT.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.217, B:K.217, B:H.255, B:V.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sette, P. et al., The Phe105 Loop of Alix Bro1 Domain Plays a Key Role in HIV-1 Release. Structure (2011)

Release Date

2011-09-14

Peptides

Tyrosine-protein phosphatase non-receptor type 23: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein phosphatase non-receptor type 23