SMTL ID : 3rbv.1

Crystal Structure of KijD10, a 3-ketoreductase from Actinomadura kijaniata incomplex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.61, G.80, Y.81, P.82, W.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.81 Water bridges: A:W.105

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 21 residues within 4Å: Chain A: G.34, C.35, A.36, D.37, I.38, R.41, S.60, R.61, R.65, Y.81, P.96, L.97, P.98, A.99, L.101, H.102, E.119, K.120, P.121, D.200, Y.204 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.204 Hydrogen bonds: A:C.35, A:D.37, A:D.37, A:D.37, A:I.38, A:R.41, A:R.61, A:R.61, A:Y.81, A:H.102, A:D.200 Water bridges: A:A.99 Salt bridges: A:R.61 pi-Cation interactions: A:R.61, A:R.61, A:K.120

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: K.120, N.146, F.147, M.148, F.149, Y.204 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: N.274, H.288 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: R.341, T.342, A.344, D.346 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.344, A:D.346

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 2 residues within 4Å: Chain A: H.303, K.308 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.303, A:K.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubiak, R.L. et al., Combined Structural and Functional Investigation of a C-3''-Ketoreductase Involved in the Biosynthesis of dTDP-l-Digitoxose. Biochemistry (2011)

Release Date

2011-06-08

Peptides

Sugar 3-ketoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sugar 3-ketoreductase

Related Entries With Identical Sequence