SMTL ID : 3rce.1

Bacterial oligosaccharyltransferase PglB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x GLY- ASP- GLN- ASN- ALA- THR- PPN- GLY: Substrate Mimic Peptide(Non-covalent)

GLY-ASP-GLN-ASN-ALA-THR-PPN-GLY.1: 21 residues within 4Å: Chain A: T.53, T.54, N.55, D.56, N.146, R.147, Y.152, E.315, T.316, I.317, M.318, E.319, N.321, R.331, L.374, W.463, W.464, D.465, G.482, I.572, V.575 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.316, A:I.572, A:V.575 Hydrogen bonds: A:N.55, A:R.147, A:T.316, A:M.318, A:E.319, A:W.463, A:D.465, A:G.482 Salt bridges: A:R.147, A:R.331

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.56, D.154, E.319 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:D.154, A:D.154, A:E.319 MG.3: 3 residues within 4Å: Chain A: Q.73, D.76, D.475 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.76, A:D.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lizak, C. et al., X-ray structure of a bacterial oligosaccharyltransferase. Nature (2011)

Release Date

2011-06-15

Peptides

Oligosaccharide transferase to N-glycosylate proteins: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Oligosaccharide transferase to N-glycosylate proteins