SMTL ID : 3rd9.1

Human Cyclophilin D Complexed with a Fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x MSY: 3-(3-methyl-5-oxo-4,5-dihydro-1H-pyrazol-1-yl)benzenesulfonamide(Non-covalent)

MSY.1: 9 residues within 4Å: Chain A: H.55, R.56, Q.64, N.72, G.73, A.102, N.103, Q.112, H.127 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.102 Hydrogen bonds: A:R.56, A:N.103 Water bridges: A:Q.64, A:Q.64, A:Q.64 pi-Cation interactions: A:R.56

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: P.59, S.60 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed-Belkacem, A. et al., Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities. Nat Commun (2016)

Release Date

2012-03-21

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

Related Entries With Identical Sequence