SMTL ID : 3rde.1 (4 other biounits)

Crystal structure of the catalytic domain of porcine leukocyte 12-lipoxygenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: T.26, D.29, H.393 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.29, A:H.393, H2O.8

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 5 residues within 4Å: Chain A: H.271, H.276, H.451, H.455, I.573 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.271, A:H.276, A:H.451, A:H.455, H2O.1

1 x OYP: 3-{4-[(tridec-2-yn-1-yloxy)methyl]phenyl}propanoic acid(Non-covalent)

OYP.3: 20 residues within 4Å: Chain A: F.85, L.89, E.267, H.271, L.272, H.276, I.310, R.313, A.314, G.317, L.318, I.324, V.328, Q.458, Q.500, I.503, T.504, Q.506, L.507, I.573 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.85, A:L.89, A:L.272, A:L.318, A:L.318, A:L.318, A:L.318, A:I.324, A:V.328, A:Q.500, A:I.503, A:T.504, A:L.507, A:L.507 Hydrogen bonds: A:Q.506

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Crystal structure of 12-lipoxygenase catalytic-domain-inhibitor complex identifies a substrate-binding channel for catalysis. Structure (2012)

Release Date

2012-04-18

Peptides

Arachidonate 12-lipoxygenase, 12S-type: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Arachidonate 12-lipoxygenase, 12S-type

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