SMTL ID : 3rf6.1 (1 other biounit)

Crystal structure of glycerol-3 phosphate bound HAD-like phosphatase from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 4 residues within 4Å: Chain A: R.227, L.228, R.231 Chain B: R.232 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.228 Hydrogen bonds: A:R.231 Water bridges: A:R.231, B:R.232, B:R.232, B:R.232, B:R.232 Salt bridges: A:R.227, A:R.231, A:R.231, B:R.232, B:R.232 FLC.5: 4 residues within 4Å: Chain A: R.232 Chain B: R.227, L.228, R.231 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.228 Water bridges: B:R.231, B:R.231 Salt bridges: B:R.227, B:R.231, B:R.231, B:R.231, A:R.232 Hydrogen bonds: A:R.232

2 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)

G3P.2: 12 residues within 4Å: Chain A: A.22, I.23, D.24, T.55, N.56, G.57, D.166, N.207, D.209, W.212, K.249 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:I.23, A:D.24, A:T.55, A:N.56, A:G.57, A:N.207, A:D.209 Water bridges: A:T.55, A:Q.223, A:K.249, A:S.305 Salt bridges: A:K.249 G3P.6: 12 residues within 4Å: Chain B: A.22, I.23, D.24, T.55, N.56, G.57, N.207, D.209, W.212, K.249, D.301 Ligands: MG.7 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:I.23, B:D.24, B:D.24, B:T.55, B:N.56, B:N.56, B:G.57, B:D.166, B:N.207 Water bridges: B:D.209, B:Q.223, B:K.249, B:K.249, B:K.249 Salt bridges: B:K.249

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.24, D.301 Ligands: G3P.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.24, A:D.301, H2O.2, H2O.8 MG.4: 6 residues within 4Å: Chain A: G.137, L.138, Q.142 Chain B: G.137, L.138, Q.142 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:G.137, A:G.137, H2O.2, H2O.2 MG.7: 3 residues within 4Å: Chain B: D.24, D.301 Ligands: G3P.6 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.24, B:D.301, H2O.12, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of glycerol-3 phosphate bound HAD-like phosphatase from Saccharomyces cerevisiae. TO BE PUBLISHED

Release Date

2011-06-01

Peptides

Uncharacterized protein YKR070W: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein YKR070W

Related Entries With Identical Sequence