SMTL ID : 3rfa.2 (1 other biounit)

X-ray structure of RlmN from Escherichia coli in complex with S-adenosylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain A: C.125, L.127, E.128, C.129, C.132, A.135, G.179, E.180, S.213 Ligands: SAM.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Salt bridges: A:E.180 Metal complexes: A:C.125, A:C.129, A:C.132, SAM.2

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 20 residues within 4Å: Chain A: F.131, C.132, M.175, M.176, G.177, G.179, E.180, P.181, S.211, T.212, S.213, S.233, H.235, E.278, V.280, I.309, P.310, W.311, N.312 Ligands: SF4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.180, A:S.211, A:S.233, A:S.233, A:N.312, A:N.312 Water bridges: A:R.344 pi-Stacking: A:F.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boal, A.K. et al., Structural basis for methyl transfer by a radical SAM enzyme. Science (2011)

Release Date

2011-05-11

Peptides

Ribosomal RNA large subunit methyltransferase N: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal RNA large subunit methyltransferase N

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