- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x 15L: D-galactaro-1,5-lactone(Non-covalent)
15L.2: 10 residues within 4Å:- Chain A: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.111, A:N.112, A:Y.136
- Water bridges: A:Q.14, A:S.75, A:C.166
- Salt bridges: A:H.113, A:H.113, A:R.174
15L.8: 10 residues within 4Å:- Chain B: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.7
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.111, B:N.112, B:N.112, B:Y.136
- Water bridges: B:S.75
- Salt bridges: B:H.113, B:H.113, B:R.174
15L.12: 10 residues within 4Å:- Chain C: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.11
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:S.111, C:N.112, C:N.112, C:Y.136
- Water bridges: C:Q.14, C:S.75, C:S.75, C:C.166
- Salt bridges: C:H.113, C:H.113, C:R.174
15L.16: 10 residues within 4Å:- Chain D: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.15
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:S.111, D:N.112, D:Y.136, D:Y.136
- Water bridges: D:Q.14, D:S.75, D:C.166
- Salt bridges: D:H.113, D:H.113, D:R.174
15L.22: 10 residues within 4Å:- Chain E: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.21
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:S.111, E:N.112, E:N.112, E:Y.136, E:Y.136
- Water bridges: E:S.75
- Salt bridges: E:H.113, E:H.113, E:R.174
15L.26: 10 residues within 4Å:- Chain F: S.75, S.111, N.112, H.113, Y.136, G.164, S.165, R.174, F.258
- Ligands: NAI.25
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:S.111, F:N.112, F:N.112, F:Y.136, F:Y.136
- Water bridges: F:Q.14, F:S.75, F:S.75, F:C.166
- Salt bridges: F:H.113, F:H.113, F:R.174
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 3 residues within 4Å:- Chain A: G.64, A.100, H.101
Ligand excluded by PLIPPO4.4: 4 residues within 4Å:- Chain A: V.18, E.21, R.22, H.182
Ligand excluded by PLIPPO4.5: 4 residues within 4Å:- Chain A: R.123, G.125, D.215
- Chain F: H.218
Ligand excluded by PLIPPO4.6: 2 residues within 4Å:- Chain A: P.119, R.131
Ligand excluded by PLIPPO4.9: 4 residues within 4Å:- Chain B: A.63, G.64, H.101, G.102
Ligand excluded by PLIPPO4.10: 3 residues within 4Å:- Chain B: K.265
- Chain C: A.55, Y.92
Ligand excluded by PLIPPO4.13: 4 residues within 4Å:- Chain C: A.63, G.64, H.101, G.102
Ligand excluded by PLIPPO4.14: 2 residues within 4Å:- Chain C: R.22, H.182
Ligand excluded by PLIPPO4.17: 3 residues within 4Å:- Chain D: G.64, A.100, H.101
Ligand excluded by PLIPPO4.18: 4 residues within 4Å:- Chain D: V.18, E.21, R.22, H.182
Ligand excluded by PLIPPO4.19: 4 residues within 4Å:- Chain C: H.218
- Chain D: R.123, G.125, D.215
Ligand excluded by PLIPPO4.20: 2 residues within 4Å:- Chain D: P.119, R.131
Ligand excluded by PLIPPO4.23: 4 residues within 4Å:- Chain E: A.63, G.64, H.101, G.102
Ligand excluded by PLIPPO4.24: 3 residues within 4Å:- Chain E: K.265
- Chain F: A.55, Y.92
Ligand excluded by PLIPPO4.27: 4 residues within 4Å:- Chain F: A.63, G.64, H.101, G.102
Ligand excluded by PLIPPO4.28: 2 residues within 4Å:- Chain F: R.22, H.182
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parkkinen, T. et al., Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-15
- Peptides
- Uronate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x 15L: D-galactaro-1,5-lactone(Non-covalent)
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parkkinen, T. et al., Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-15
- Peptides
- Uronate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C