- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 3 residues within 4Å:- Chain A: G.64, A.100, H.101
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.64
- Water bridges: A:V.62, A:C.65
- Salt bridges: A:H.101
PO4.3: 3 residues within 4Å:- Chain A: V.18, R.22, H.182
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.22, A:R.22, A:R.22
- Salt bridges: A:R.22, A:H.182
PO4.4: 3 residues within 4Å:- Chain A: R.123, G.125, D.215
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:G.125, A:D.215
- Salt bridges: F:H.218
PO4.6: 4 residues within 4Å:- Chain B: A.63, G.64, H.101, G.102
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.64
- Water bridges: B:C.65
- Salt bridges: B:H.101
PO4.8: 4 residues within 4Å:- Chain C: A.63, G.64, H.101, G.102
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.64, C:H.101
- Water bridges: C:C.65
- Salt bridges: C:H.101
PO4.9: 2 residues within 4Å:- Chain C: R.22, H.182
6 PLIP interactions:6 interactions with chain C- Water bridges: C:V.18, C:E.21, C:R.22, C:R.22
- Salt bridges: C:R.22, C:H.182
PO4.11: 3 residues within 4Å:- Chain D: G.64, A.100, H.101
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.64
- Water bridges: D:V.62, D:C.65
- Salt bridges: D:H.101
PO4.12: 3 residues within 4Å:- Chain D: V.18, R.22, H.182
5 PLIP interactions:5 interactions with chain D- Water bridges: D:R.22, D:R.22, D:R.22
- Salt bridges: D:R.22, D:H.182
PO4.13: 3 residues within 4Å:- Chain D: R.123, G.125, D.215
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain D- Salt bridges: C:H.218
- Hydrogen bonds: D:G.125, D:D.215, D:D.215
PO4.15: 4 residues within 4Å:- Chain E: A.63, G.64, H.101, G.102
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.64
- Water bridges: E:C.65
- Salt bridges: E:H.101
PO4.17: 4 residues within 4Å:- Chain F: A.63, G.64, H.101, G.102
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.64, F:H.101
- Water bridges: F:C.65
- Salt bridges: F:H.101
PO4.18: 2 residues within 4Å:- Chain F: R.22, H.182
6 PLIP interactions:6 interactions with chain F- Water bridges: F:V.18, F:E.21, F:R.22, F:R.22
- Salt bridges: F:R.22, F:H.182
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parkkinen, T. et al., Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-15
- Peptides
- Uronate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parkkinen, T. et al., Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-15
- Peptides
- Uronate dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C