SMTL ID : 3rgb.1

Crystal structure of particulate methane monooxygenase from Methylococcus capsulatus (Bath)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-3-mer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.48, H.72, Q.404 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.48, A:H.72 CU.6: 4 residues within 4Å: Chain D: H.48, H.72, L.390, Q.404 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.48, D:H.72 CU.9: 4 residues within 4Å: Chain E: H.48, H.72, L.390, Q.404 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.48, E:H.72

9 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.57 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.57, A:E.57 ZN.4: 2 residues within 4Å: Chain B: H.11 Chain C: E.284 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.11 ZN.5: 3 residues within 4Å: Chain C: D.156, H.160, H.173 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.156, C:D.156, C:H.160, C:H.173, H2O.1 ZN.7: 1 residues within 4Å: Chain D: G.335 No protein-ligand interaction detected (PLIP) ZN.10: 1 residues within 4Å: Chain E: E.57 No protein-ligand interaction detected (PLIP) ZN.12: 2 residues within 4Å: Chain F: H.11 Chain H: E.284 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.11 ZN.13: 2 residues within 4Å: Chain G: H.11 Chain I: E.284 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain G Metal complexes: I:E.284, G:H.11 ZN.14: 3 residues within 4Å: Chain H: D.156, H.160, H.173 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.156, H:D.156, H:H.160, H:H.173, H2O.1 ZN.15: 3 residues within 4Å: Chain I: D.156, H.160, H.173 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.156, I:D.156, I:H.160, I:H.173, H2O.1

3 x CUA: DINUCLEAR COPPER ION(Non-covalent)(Covalent)

CUA.3: 3 residues within 4Å: Chain A: H.33, H.137, H.139 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.33, A:H.33, A:H.137, A:H.139, A:H.139 CUA.8: 4 residues within 4Å: Chain D: H.33, H.137, H.139, G.154 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.33, D:H.137, D:H.137, D:H.139, D:H.139 CUA.11: 3 residues within 4Å: Chain E: H.33, H.137, H.139 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.33, E:H.33, E:H.137, E:H.139, E:H.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, S.M. et al., Crystal Structure and Characterization of Particulate Methane Monooxygenase from Methylocystis species Strain M. Biochemistry (2011)

Release Date

2011-11-23

Peptides

Methane monooxygenase subunit B2: ADE
Methane monooxygenase subunit A2: BFG
Methane monooxygenase subunit C2: CHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
E

E
I

B
B

F
J

G
F

C
C

H
K

I
G

Membrane

We predict this structure to be a membrane protein.
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Methane monooxygenase subunit B2

Methane monooxygenase subunit A2

Methane monooxygenase subunit C2

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