SMTL ID : 3rhd.1 (2 other biounits)

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GapN from Methanocaldococcus jannaschii DSM 2661 complexed with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 19 residues within 4Å: Chain A: I.137, T.138, F.140, H.164, P.165, S.166, S.167, K.168, G.199, A.200, G.201, E.202, G.205, D.206, F.219, T.220, G.221, S.222, V.225 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.138, A:S.166, A:S.167, A:G.201, A:S.222, A:S.222 Water bridges: A:K.168, A:K.168, A:E.202, A:D.206, A:D.206 Salt bridges: A:H.164, A:K.168, A:K.168 NAP.2: 21 residues within 4Å: Chain B: I.137, T.138, P.139, F.140, H.164, P.165, S.166, S.167, K.168, G.199, A.200, G.201, E.202, G.205, D.206, V.209, F.219, T.220, G.221, S.222, V.225 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.138, B:F.140, B:S.166, B:S.167, B:G.201, B:S.222 Water bridges: B:D.206, B:D.206 Salt bridges: B:H.164, B:K.168, B:K.168, B:K.168 NAP.3: 19 residues within 4Å: Chain C: I.137, T.138, P.139, F.140, H.164, P.165, S.166, S.167, K.168, G.199, G.201, E.202, G.205, D.206, F.219, T.220, G.221, S.222, V.225 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.138, C:S.166, C:S.167, C:G.201, C:S.222, C:S.222 Water bridges: C:S.166, C:K.168, C:K.168, C:D.206 Salt bridges: C:H.164, C:K.168, C:K.168, C:K.168 NAP.4: 20 residues within 4Å: Chain D: I.137, T.138, P.139, F.140, H.164, P.165, S.166, S.167, K.168, G.199, G.201, E.202, G.205, D.206, V.209, F.219, T.220, G.221, S.222, V.225 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:T.138, D:S.166, D:S.167, D:G.201, D:S.222, D:S.222 Water bridges: D:S.167, D:S.167, D:K.168, D:K.168, D:K.168, D:K.168, D:K.168, D:K.168, D:D.206 Salt bridges: D:H.164, D:K.168, D:K.168, D:K.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GapN from Methanocaldococcus jannaschii DSM 2661 complexed with NADP. To be Published

Release Date

2011-05-18

Peptides

Lactaldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Lactaldehyde dehydrogenase

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