SMTL ID : 3rhm.1

Crystal structure of the E673Q mutant oF C-Terminal domain of 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-tetramer

Ligands

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: D.466, K.467 Chain C: R.169 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: R.251, P.256 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: R.379, Y.414 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: R.166, R.169 Chain C: Y.463 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: N.163 Chain B: Q.143 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: K.135, Q.143 Chain B: N.163 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: T.60, N.353, E.356, R.396 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: K.284, L.508, R.509, I.510 Chain B: F.490, F.495, G.496, K.497 Ligand excluded by PLIP SO4.10: 8 residues within 4Å: Chain A: F.490, F.495, G.496, K.497 Chain B: K.284, L.508, R.509, I.510 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: R.169 Chain D: D.466, K.467 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: D.466, K.467 Chain D: R.169 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: R.251, P.256 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain B: R.379, Y.414 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: R.166, R.169 Chain D: Y.463 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain B: N.353, E.356, R.396 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain A: R.169 Chain C: K.467 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain C: R.251, P.256 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: R.379, Y.414 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain A: Y.463 Chain C: R.166, R.169 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: N.163 Chain D: K.135, Q.143 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain C: N.353, R.396 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain C: K.284, R.509, I.510 Chain D: F.490, F.495, G.496, K.497 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: K.30, R.357 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain D: R.251, P.256 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain D: R.379, Y.414 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain B: Y.463 Chain D: R.166, R.169 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain D: T.60, N.353, E.356, R.396 Ligand excluded by PLIP SO4.31: 8 residues within 4Å: Chain C: F.490, F.495, G.496, K.497 Chain D: K.284, L.508, R.509, I.510 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 9 residues within 4Å: Chain A: Y.190, M.193, M.194, W.197, N.321, C.322, I.323, N.479, T.481 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.190, A:N.321 Water bridges: A:T.481, A:T.481 GOL.17: 7 residues within 4Å: Chain B: Y.190, M.194, W.197, N.321, C.322, N.479, T.481 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.190, B:N.321 GOL.26: 8 residues within 4Å: Chain C: Y.190, M.193, W.197, N.321, C.322, I.323, N.479, T.481 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.321, C:N.479 GOL.32: 9 residues within 4Å: Chain D: Y.190, M.193, M.194, W.197, N.321, C.322, I.323, N.479, T.481 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.321, D:N.321 Water bridges: D:T.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsybovsky, Y. et al., Conserved catalytic residues of the ALDH1L1 aldehyde dehydrogenase domain control binding and discharging of the coenzyme. J.Biol.Chem. (2011)

Release Date

2011-04-27

Peptides

Aldehyde dehydrogenase 1 family, member L1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Aldehyde dehydrogenase 1 family, member L1

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