SMTL ID : 3rhp.1

Crystal structure of the C707A mutant of the C-Terminal domain of 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.251, P.256 Ligand excluded by PLIP SO4.2: 8 residues within 4Å: Chain A: K.284, L.508, R.509, I.510 Chain B: F.490, F.495, G.496, K.497 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.166, R.169 Chain C: Y.463 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: N.353, E.356, R.396 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: G.496, K.497 Chain B: K.284, L.508, R.509, I.510 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: D.466, K.467 Chain C: R.169 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: R.169 Chain D: D.466, K.467 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: D.466, K.467 Chain D: R.169 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: R.251, P.256 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: R.166, R.169 Chain D: Y.463, K.467 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: N.163 Chain B: Q.143, K.480 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: K.135, Q.143 Chain B: N.163 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: T.60, N.353, E.356, R.396 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain C: R.251, P.256 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain A: R.169 Chain C: D.466, K.467 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain C: K.30, R.357 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain A: Y.463, K.467 Chain C: R.166, R.169 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: N.163 Chain D: Q.143 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: T.60, N.353, R.396 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain C: K.284, R.509, I.510 Chain D: F.490, G.496, K.497 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain D: R.251, P.256 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: Y.463 Chain D: R.166, R.169 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain D: T.60, N.353, R.396 Ligand excluded by PLIP SO4.27: 7 residues within 4Å: Chain C: F.490, G.496, K.497 Chain D: K.284, L.508, R.509, I.510 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: Y.190, M.193, W.197, N.321, N.479, T.481 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.190, A:N.321, A:T.481, A:T.481 Water bridges: A:A.322 GOL.15: 9 residues within 4Å: Chain B: T.136, M.140, Y.190, M.193, W.197, F.316, N.321, N.479, T.481 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.190, B:N.321, B:T.481, B:T.481 Water bridges: B:A.322 GOL.23: 6 residues within 4Å: Chain C: Y.190, W.197, N.321, I.323, N.479, T.481 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.321, C:T.481 GOL.28: 7 residues within 4Å: Chain D: Y.190, M.193, W.197, F.316, N.321, N.479, T.481 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.321, D:N.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsybovsky, Y. et al., Conserved catalytic residues of the ALDH1L1 aldehyde dehydrogenase domain control binding and discharging of the coenzyme. J.Biol.Chem. (2011)

Release Date

2011-05-04

Peptides

Aldehyde dehydrogenase 1 family, member L1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Aldehyde dehydrogenase 1 family, member L1

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