SMTL ID : 3rht.1 (1 other biounit)

Crystal structure of type 1 glutamine amidotransferase (GATase1)-like protein from Planctomyces limnophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.12, D.58, D.210 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.12, A:D.58, A:D.210, H2O.1, H2O.2 CA.6: 3 residues within 4Å: Chain B: D.12, D.58, D.210 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.12, B:D.58, B:D.210, H2O.153, H2O.154

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: E.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.179, A:E.179

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.15, E.16, T.17, G.20, Y.21, G.235, A.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.15, A:G.20, A:G.235 Water bridges: A:Y.21 GOL.4: 7 residues within 4Å: Chain A: D.58, G.87, W.88, D.210, P.213, H.214, W.215 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.58, A:W.88, A:H.214, A:H.214, A:W.215 Water bridges: A:P.213 GOL.8: 8 residues within 4Å: Chain B: D.58, G.87, W.88, D.210, A.212, P.213, H.214, W.215 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.58, B:W.88, B:D.210, B:H.214, B:H.214, B:W.215 Water bridges: B:P.213 GOL.9: 7 residues within 4Å: Chain B: L.15, E.16, T.17, G.20, Y.21, G.235, A.236 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.15, B:E.16, B:G.20, B:Y.21, B:G.235

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain A: F.176, G.181, K.182, T.183 Chain B: W.172 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.183, A:T.183 Water bridges: A:T.183, B:R.170, B:W.172 ACT.10: 6 residues within 4Å: Chain A: W.172, H.187 Chain B: F.176, G.181, K.182, T.183 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.187 Hydrogen bonds: B:T.183, B:T.183

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain B: S.14, L.15, Y.35 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Crystal structure of type 1 glutamine amidotransferase (GATase1)-like protein from Planctomyces limnophilus. To be Published

Release Date

2011-04-27

Peptides

(GATase1)-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

(GATase1)-like protein

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