SMTL ID : 3rhz.1

Structure and functional analysis of a new subfamily of glycosyltransferases required for glycosylation of serine-rich streptococcal adhesions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 14 residues within 4Å: Chain A: T.26, H.166, P.184, R.189, F.190, Y.205, Y.221, R.222, D.224, L.227, S.254, Y.255, K.256, S.259 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:P.184, A:Y.205 Hydrogen bonds: A:R.222, A:R.222, A:D.224, A:Y.255, A:K.256, A:S.259, A:S.259 Water bridges: A:T.26, A:T.26, A:T.26, A:R.189, A:R.189, A:R.189, A:Y.252 Salt bridges: A:R.189, A:R.189, A:K.256, A:K.256 pi-Stacking: A:Y.221 UDP.2: 14 residues within 4Å: Chain B: T.26, H.166, P.184, R.189, F.190, Y.205, Y.221, R.222, D.224, L.227, S.254, Y.255, K.256, S.259 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:P.184, B:Y.205 Hydrogen bonds: B:R.222, B:R.222, B:D.224, B:D.224, B:Y.255, B:K.256, B:S.259, B:S.259 Salt bridges: B:R.189, B:R.189, B:K.256, B:K.256 pi-Stacking: B:Y.221 UDP.4: 14 residues within 4Å: Chain C: T.26, H.166, P.184, R.189, F.190, Y.205, Y.221, R.222, D.224, L.227, S.254, Y.255, K.256, S.259 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:P.184, C:Y.205 Hydrogen bonds: C:T.26, C:R.222, C:R.222, C:D.224, C:D.224, C:Y.255, C:K.256, C:S.259, C:S.259 Water bridges: C:R.189, C:R.189, C:R.189, C:Y.221, C:K.256 Salt bridges: C:R.189, C:R.189, C:K.256, C:K.256 pi-Stacking: C:Y.221 UDP.5: 14 residues within 4Å: Chain D: T.26, H.166, P.184, R.189, F.190, Y.205, Y.221, R.222, D.224, L.227, S.254, Y.255, K.256, S.259 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.184, D:Y.205 Hydrogen bonds: D:T.26, D:R.222, D:R.222, D:D.224, D:Y.255, D:K.256, D:S.259, D:S.259 Salt bridges: D:R.189, D:R.189, D:K.256, D:K.256 pi-Stacking: D:Y.221

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain B: Q.21 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain D: Q.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, F. et al., Structural and Functional Analysis of a New Subfamily of Glycosyltransferases Required for Glycosylation of Serine-rich Streptococcal Adhesins. J.Biol.Chem. (2011)

Release Date

2011-06-01

Peptides

Nucleotide sugar synthetase-like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Nucleotide sugar synthetase-like protein