SMTL ID : 3rjl.1 (11 other biounits)

Crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from Bacillus licheniformis (Target NYSGRC-000337)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

9 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: K.339, R.340, E.343 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.343, A:E.343, H2O.1, H2O.2 CD.2: 1 residues within 4Å: Chain A: D.393 No protein-ligand interaction detected (PLIP) CD.3: 1 residues within 4Å: Chain A: E.352 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.352, H2O.4 CD.4: 2 residues within 4Å: Chain A: S.429, E.433 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.433, A:E.433 CD.5: 1 residues within 4Å: Chain A: D.432 No protein-ligand interaction detected (PLIP) CD.6: 1 residues within 4Å: Chain A: D.455 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.455, A:D.455 CD.7: 2 residues within 4Å: Chain A: E.224 Ligands: ACT.10 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.224 CD.8: 2 residues within 4Å: Chain A: D.94, E.96 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.94 CD.9: 1 residues within 4Å: Chain A: E.298 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.298

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 5 residues within 4Å: Chain A: K.108, R.111, K.112, E.224 Ligands: CD.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.108, A:K.112 Salt bridges: A:K.108, A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of 1-Pyrroline-5-Carboxylate Dehydrogenase from Bacillus Licheniformis. To be Published

Release Date

2011-04-27

Peptides

1-pyrroline-5-carboxylate dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-pyrroline-5-carboxylate dehydrogenase

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