SMTL ID : 3rjq.1

Crystal structure of anti-HIV llama VHH antibody A12 in complex with C186 gp120

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.142, T.144, P.146, I.180 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: V.66, L.67, N.137, N.149, S.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.151 NAG.3: 7 residues within 4Å: Chain A: D.119, K.160, V.162, N.170, C.333, N.334, S.335 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.162 Hydrogen bonds: A:D.119, A:K.160, A:N.170, A:S.335, A:S.335 NAG.4: 2 residues within 4Å: Chain A: N.184, T.186 No protein-ligand interaction detected (PLIP) NAG.5: 6 residues within 4Å: Chain A: E.176, E.177, I.178, N.197, E.198, E.240 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.178, A:N.197, A:E.198, A:E.240 NAG.6: 2 residues within 4Å: Chain A: N.277, S.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.277, A:S.279 NAG.7: 4 residues within 4Å: Chain A: D.280, N.283, T.294, G.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.280, A:G.295 NAG.8: 1 residues within 4Å: Chain A: N.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Crystal structure of anti-HIV A12 VHH of llama antibody in complex with C1086 gp120. To be Published

Release Date

2012-05-02

Peptides

C186 gp120: A
Llama VHH A12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C186 gp120

Llama VHH A12

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