SMTL ID : 3rk1.1

X-ray crystal Structure of the putative N-type ATP pyrophosphatase (PF0828) in complex with ATP from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR23

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: L.10, Y.11, S.12, G.14, K.15, D.16, S.17, V.35, T.36, M.37, Y.47, H.48, A.96, G.97, Q.104, F.187, E.188, T.189 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:K.15, A:D.16, A:D.16, A:S.17, A:H.48, A:H.48, A:G.97, A:Q.104, A:F.187, A:E.188, A:E.188, A:E.188, A:T.189 Salt bridges: A:K.15, A:H.48 ATP.4: 18 residues within 4Å: Chain B: L.10, Y.11, S.12, G.13, G.14, K.15, D.16, S.17, V.35, T.36, M.37, Y.47, H.48, A.96, G.97, L.99, A.100, Q.104 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.12, B:G.14, B:G.14, B:D.16, B:D.16, B:S.17, B:S.17, B:H.48, B:H.48, B:G.97, B:Q.104 Water bridges: B:K.15, B:D.16, B:H.48, B:G.97, B:T.189 Salt bridges: B:H.48, B:H.48

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: A.128, N.173, H.179, V.180, A.181, E.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.180, A:A.181 Salt bridges: A:H.179 PO4.3: 4 residues within 4Å: Chain A: K.77, E.80, D.81, R.84 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.77, A:R.84 PO4.5: 6 residues within 4Å: Chain B: E.42, H.48, T.49, I.50, E.188, K.218 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.49, B:T.49, B:T.49, B:I.50 Salt bridges: B:H.48, B:K.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., A large conformational change in the putative ATP pyrophosphatase PF0828 induced by ATP binding. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-05-11

Peptides

N-type ATP pyrophosphatase superfamily: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-type ATP pyrophosphatase superfamily

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