SMTL ID : 3rlo.1

Structural Basis of Cytosolic DNA Recognition by Innate Receptors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: P.80, T.82, L.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.80 EDO.2: 3 residues within 4Å: Chain A: F.136, E.183, R.185 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.138, A:S.186 EDO.3: 4 residues within 4Å: Chain A: F.45, C.71, G.74, F.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.74 Water bridges: A:C.71 EDO.4: 1 residues within 4Å: Chain A: K.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.32 EDO.5: 3 residues within 4Å: Chain A: Q.115, T.116, K.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.116, A:K.117 EDO.6: 5 residues within 4Å: Chain A: L.17, N.18, I.100, A.103, S.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.17, A:N.18, A:I.100 EDO.7: 3 residues within 4Å: Chain A: S.104, V.105, T.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.106, A:T.106 EDO.8: 3 residues within 4Å: Chain A: N.18, A.19, K.168 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.19, A:K.168 Water bridges: A:T.20, A:T.170 EDO.9: 4 residues within 4Å: Chain A: E.126, Q.142, D.143, N.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.126, A:Q.142, A:D.143 Water bridges: A:N.144

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.10: 5 residues within 4Å: Chain A: H.153, R.155, S.186, V.187, I.188 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.155, A:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor. Immunity (2012)

Release Date

2012-04-25

Peptides

Gamma-interferon-inducible protein 16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gamma-interferon-inducible protein 16

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