SMTL ID : 3rnd.1

W116I-OYE1 complexed with 2-(Hydroxymethyl)-cyclopent-2-enone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 18 residues within 4Å: Chain A: P.34, P.35, L.36, T.37, G.72, Q.114, H.191, N.194, R.243, P.295, G.324, N.325, Y.346, G.347, R.348, F.374, Y.375 Ligands: 3RN.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.36, A:P.295, A:R.348, A:F.374, A:Y.375 Hydrogen bonds: A:P.35, A:T.37, A:G.72, A:Q.114, A:Q.114, A:N.194, A:R.243, A:R.243, A:N.325, A:G.345, A:G.347, A:R.348 Water bridges: A:E.299, A:G.324, A:F.326, A:R.348, A:F.349 Salt bridges: A:R.348 FMN.5: 18 residues within 4Å: Chain B: P.34, P.35, L.36, T.37, G.72, Q.114, H.191, N.194, R.243, P.295, G.324, N.325, Y.346, G.347, R.348, F.374, Y.375 Ligands: 3RN.6 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:L.36, B:P.295, B:R.348, B:F.374, B:Y.375 Hydrogen bonds: B:P.35, B:T.37, B:T.37, B:G.72, B:Q.114, B:Q.114, B:N.194, B:R.243, B:R.243, B:N.325, B:G.345, B:G.347, B:R.348 Water bridges: B:G.324, B:F.326, B:R.348, B:R.348, B:F.349 Salt bridges: B:R.348

2 x 3RN: 2-(hydroxymethyl)cyclopent-2-en-1-one(Non-covalent)

3RN.2: 9 residues within 4Å: Chain A: T.37, H.191, N.194, Y.196, F.250, P.295, F.296, Y.375 Ligands: FMN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.196, A:F.296 Hydrogen bonds: A:N.194, A:N.194 3RN.6: 9 residues within 4Å: Chain B: T.37, H.191, N.194, Y.196, F.250, P.295, F.296, Y.375 Ligands: FMN.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.196, B:F.296 Hydrogen bonds: B:N.194, B:N.194

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walton, A.Z. et al., Biocatalytic Reductions of Baylis-Hillman Adducts. ACS Catalysis (2011)

Release Date

2011-08-03

Peptides

NADPH dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NADPH dehydrogenase 1

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