SMTL ID : 3rnu.1

Structural Basis of Cytosolic DNA Sensing by Innate Immune Receptors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: R.155, H.191, I.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.155, A:R.155, A:I.192 FMT.3: 5 residues within 4Å: Chain B: F.23, R.155, L.156, H.191, I.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.155, B:R.155, B:I.192 FMT.4: 5 residues within 4Å: Chain C: E.21, R.155, L.156, H.191, I.192 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.155, C:R.155, C:I.192 FMT.6: 6 residues within 4Å: Chain D: E.21, F.23, R.155, L.156, H.191, I.192 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.21, D:R.155, D:R.155, D:I.192 FMT.7: 3 residues within 4Å: Chain D: C.71, R.72, N.73 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.73

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain B: P.80, F.81, T.82, L.83 2 PLIP interactions: 2 interactions with chain B Water bridges: B:F.81, B:V.84 EDO.5: 4 residues within 4Å: Chain D: P.80, F.81, T.82, L.83 1 PLIP interactions: 1 interactions with chain D Water bridges: D:V.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor. Immunity (2012)

Release Date

2012-04-25

Peptides

Gamma-interferon-inducible protein 16: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Gamma-interferon-inducible protein 16

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